Ref: Biostars - FRIP score ATAC-seq. In paired-end sequencing, we use the word fragment because the two reads that are produced always originate from the same DNA fragment and are therefore not independent of each other as reads from single-end sequencing would be. As FRiP comes from single-end ChIP-seq data, this is why they probably termed it ...

May 07, 2020 · 在Encode的ATAC文库质控标准中，认为一个高质量的文库其FRiP score值应该大于0.03，最低也要大于0.02。FRiP全称如下. Fraction of reads in peaks. 表示的是位于peak区域的reads的比例，FRiP score是一个比值，其分子是位于peak区域的reads总数，分母是比对到参考基因组上的reads总数。

If you have a Transcription Factor ChIP-seq (and TF perturbed expression) data, Cistrome-GO help you predict the function of this TF. Please help us curate the samples which has incorrect meta-data annotation by clicking the button on the inspector page.

Jan 21, 2021 · Finally, an important quality control step is the calculation of the signal to noise ratio, which can done by calculating the fraction of reads in …